2023
Lewinski M, Steffen A, Kachariya N, Elgner M, Schmal C, Messini N, Köster T, Reichel M, Sattler M, Zarnack K and Staiger D (2023) Arabidopsis thaliana GLYCINE RICH RNA-BINDING PROTEIN 7 interaction with its iCLIP target LHCB1.1 correlates with changes in RNA stability and circadian oscillation. Plant J, doi: 10.1111/tpj.16601 Link
Bronkhorst AW, Lee CY, Möckel MM, Ruegenberg S, de Jesus Domingues AM, Sadouki S, Piccinno R, Sumiyoshi T, Siomi MC, Stelzl L, Luck K and Ketting RF (2023) An extended Tudor domain within Vreteno interconnects Gtsf1L and Ago3 for piRNA biogenesis in Bombyx mori. EMBO J, doi: 10.15252/embj.2023114072 Link
Zarnack K and Eyras E (2023) ‘Artificial intelligence and machine learning in RNA biology.’Brief Bioinform, doi: 10.1093/bib/bbad415 Link
Glaser SF, Brezski A, Baumgarten N, Klangwart M, Heumüller AW, Maji RK, Leisegang MS, Guenther S, Zehendner CM, John D, Schulz MH, Zarnack K and Dimmeler S (2023) Circular RNA circPLOD2 regulates pericyte function by targeting the transcription factor KLF4. Cell Rep, doi: 10.1016/j.celrep.2023.112824 Link
ankaranarayanan S, Haag C, Petzsch P, Köhrer K, Matuszyńska A, Zarnack K and Feldbrügge M (2023) The mRNA stability factor Khd4 defines a specific mRNA regulon for membrane trafficking in the pathogen Ustilago maydis. Proc Natl Acad Sci, doi: 10.1073/pnas.2301731120 Link
Ebersberger S, Hipp C, Mulorz MM, Buchbender A, Merzhakupova D, Kang H-S, Martínez-Lumbreras S, Kristoferi P, Sutandy R, Llacsahuanga L, Schönfeld J, Bakisoglu C, Busch A, Hänel H, Welzel M, di Liddo A, Möckel M, Zarnak K, Ebersberger I, Legewie S, Luck K, Sattler M and König J (2023) FUBP1 is a general splicing factor facilitating 3’ splice site recognition and splicing of long introns. (Submitted), doi: 10.1016/j.molcel.2023.07.002 Link
auer R, Meyer SP, Raue R, Palmer MA, Guerrero Ruiz VM, Cardamone G, Rösser S, Heffels M, Roesmann F, Wilhelm A, Lütjohann D, Zarnack K, Fuhrmann DC, Widera M, Schmid T and Brüne B (2023) Hypoxia-altered cholesterol homeostasis enhances the expression of interferon-stimulated genes upon SARS-CoV-2 infections in monocytes. Front Immunol, doi: 10.3389/fimmu.2023.1121864 Link
Pradhan M, Musheev M, Schweiger S, Niehrs C, Rausch O, Zarnack K, Keller Valsecchi CI and König J (2023) RNA stability controlled by m6A methylation contributes to X-to-autosome dosage compensation in mammals.Nat Struct Mol Biol, doi: 10.1038/s41594-023-00997-7 Link
Acera Mateos P, Zhou Y, Zarnack K and Eyras E (2023) Concepts and methods for transcriptome-wide prediction of chemical messenger RNA modifications with machine learning. Brief Bioinform, doi: 10.1093/bib/bbad163 Link
Molitor L, Klostermann M, Bacher S, Merl-Pham J, Spranger N, Burczyk S, Ketteler C, Rusha E, Tews D, Pertek A, Proske M, Busch A, Reschke S, Feederle R, Hauck SM, Blum H, Drukker M, Fischer-Posovszky P, König J, Zarnack K and Niessing D (2023) Depletion of the RNA-binding protein PURA triggers changes in posttranscriptional gene regulation and loss of P-bodies. Nucleic Acids Res, doi: 10.1093/nar/gkac1237 Link
Keil P, Wulf A, Kachariya N, Reuscher S, Hühn K, Silbern I, Altmüller J, Keller M, Stehle R, Zarnack K, Sattler M, Urlaub H and Sträßer K (2023) Npl3 functions in mRNP assembly by recruitment of mRNP components to the transcription site and their transfer onto the mRNA. Nucleic Acids Res, doi: 10.1093/nar/gkac1206 Link
de Oliveira Freitas Machado C, Schafranek M, Brüggemann M, Hernández Cañás MC, Keller M, Di Liddo A, Brezski A, Blümel N, Arnold B, Bremm A, Wittig I, Jaé N, McNicoll F, Dimmeler S, Zarnack K and Müller-McNicoll M (2023) Poison cassette exon splicing of SRSF6 regulates nuclear speckle dispersal and the response to hypoxia. Nucleic Acids Res, doi: 10.1093/nar/gkac1225 Link